The Extended Randomized Numerical alignEr
We present ERNE (Extended Randomized Numerical alignEr), a short string alignment package whose goal is to provide an all-inclusive set of tools to handle short (NGS-like) reads. ERNE comprises ERNE-MAP (core alignment tool/algorithm), ERNE-DMAP (distributed version of the aligner), ERNE- BS5 (bisulfite treated reads aligner), and ERNE-VISUAL (graphical user interface).
rNA is an highly performing and sensitive aligner for Illumina reads. We have improved the rNA core algorithm and added several new freatures.
Available software in ERNE package are:
Udated on June 13, 2012